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  1. Jalview
  2. JAL-1103

extend annotation format to support specifying calculation IDs for groups of annotation

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.8
    • Fix Version/s: None
    • Component/s: file format issue
    • Labels:
      None

      Description

      the calcId attribute introduced in v2.8 allows Jalview to recognise groups of annotation produced by some operation independently of any visual attributes (like its label). The annotation file format should allow this attribute to be set in the same way as the graphgroup - e.g:

      # set calcId to TCOFFEE for some annotation
      CALC_ID<tab>TCOFFEE
      ..
      ..
      ...
      CALC_ID
      # remaining annotation have a null id

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          Issue Links

          blocks

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-1294 Cannot export and re-import IUPred protein disorder predictions as annotation file

          • Major - Major loss of function.
          • Resolved
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3066 Integrate Slivka Java Client with Jalview's Web Services GUI

          • Major - Major loss of function.
          • Being documented

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1110 extend project file to store calcId attribute for annotation on the alignment

          • Major - Major loss of function.
          • Resolved

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              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: