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  1. Jalview
  2. JAL-1000

translate between DNA and RNA versions of nucleotide sequence

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Datamodel, na
    • Labels:
      None

      Description

      A function to allow thymine containing nucleotide chains to be translated to uracil containing chains, and vice-versa. Comparators are also necessary to allow a DNA sequence and its corresponding RNA translation to be equated, and to identify whether a nucleotide sequence might be DNA or RNA based on the presence of thymine or uracil nucleotides.

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          Issue Links

          blocks

          Bug - A problem which impairs or prevents the functions of the product. JAL-886 fetching EMBL reference for an RNA sequence results fails with a sequence mismatch

          • Major - Major loss of function.
          • In Progress
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3028 Option to 'force' alignment to nucleotide

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-2813 Reverse complementing RNA sequences translates them to DNA

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
              Votes:
              1 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated: