Uploaded image for project: 'JABAWS'
  1. JABAWS
  2. JWS-132

Problem with amino acid conservation calculation with AAConWS by VALDAR method using JABAWS Virtual Appliance

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Not A Bug
    • Affects Version/s: 2.2
    • Fix Version/s: None
    • Component/s: jaba-vm
    • Labels:
      None
    • Environment:
      Desktop computer 12th Gen Intel(R) Core(TM) i5-12400; Windows 11 Enterprise
      Jalview Version: 2.11.2.6; JABAWS2.2 – Vmware Workstation 17 Player
    • Urgency:
      Highest

      Description

      Calculation of conservation with AACon by VALDAR method is not working for alignments with more than 5 000 amino acid sequences. I have already changed the settings of the virtual machine for 4 CPU and 16 GB memory to work with larger alignments, but no calculation is still being performed. It continues to not appear the bar for the VALDAR method at the end.
      I need to calculate conservation by VALDAR for an alignment with 21 5000 sequences.

        Attachments

          Activity

            People

            Assignee:
            smacgowan Stuart MacGowan
            Reporter:
            v.correia Vanessa Correia
            Votes:
            0 Vote for this issue
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: