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  1. Jalview
  2. JAL-2647

Storage of input data + score model/parameters for tree and PCA

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    Details

    • Type: New Feature
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.0, 2.12.0
    • Fix Version/s: 2.13.0
    • Component/s: file format issue
    • Labels:
      None

      Description

      Trees and PCAs calculated in Jalview depend on the alignment and also additional data such as the score model, features displayed, etc.

      The Jalview project should store and faithfully restore metadata to ensure reproducibility.

        Attachments

          Issue Links

          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-1483 feature based tree/pca calculation

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2498 recover displayed features when showing input data for PCA/Tree from Feature Similarity

          • Major - Major loss of function.
          • In Progress
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1767 Save PCA viewer in Jalview Projects

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Task - A task that needs to be done. JAL-2674 Change HiddenColumns code to use iterators

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: