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  1. Jalview
  2. JAL-2386

Change Colour (All Groups) applies PID threshold but not Conservation

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.10.1
    • Fix Version/s: 2.10.2
    • Component/s: jvdesktop, jvlite
    • Labels:
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      Description

      Behaviour of Change Colour with Apply to All Groups selected is inconsistent:
      - PID threshold is applied to all groups along with the selected colour scheme
      - Consensus slider value is not

      For example,
      - load uniref50.fa and colour by helix propensity
      - create a subgroup and colour by turn propensity
      - apply a PID threshold to the alignment colour scheme
      - select Colour | Apply Colour to All Groups and change to Hydrophobicity
         -> both colour and PID threshold are also applied to the sub-group
      Compare the same procedure but with By Conservation instead of PID:
         -> the Conservation threshold is not applied to the sub-group

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Updated:
                Resolved: