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  1. Jalview
  2. JAL-2203

Shorter IDs for sequences retrieved from databases

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
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      Description

      Many of the database fetchers generate sequences with long, unwieldly sequence IDs like 'dbname|acc1|acc2|...'.

      Ideally, sequences returned from a database should be minimally unique for that database (e.g. 1xyz|A for chain a of pdb:1xyz .. or even 1xyzA - since Jalview copes with id+chainCode in PDB ID resolution).

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          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2758 Short IDs for Uniprot sequence retrieval

          • Major - Major loss of function.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: