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  1. Jalview
  2. JAL-2199

flatfile output of selected sequences have incorrect start/end

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: 2.9, 2.10.0
    • Fix Version/s: None
    • Component/s: gui, jvdesktop
    • Labels:
      None

      Description

      Import
      >seq1/1-10
      AASTVMTGED
      >seq2/1-10
      RSWCYFLIMQ

      Hide first two columns.
      Select all sequences, right-click and export selection without exporting the hidden columns

      Result will be seq1/1-10 and seq2/1-10 with STVMTGED and RSWCYFLIMQ

      expected output
      >seq1/3-10
      STVMTGED
      >seq2/3-10
      WCYFLIMQ

        Attachments

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1486 flatfile output of visible region has incorrect sequence start/end

          • Critical - Crashes, loss of data, severe memory leak.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-4313 AlignmentAnnotation#makeVisibleAnnotation produces incorrect results.

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Being tested

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: