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com/stevesoft/pat/Bracket.js
com/stevesoft/pat/CaseMgr.js
com/stevesoft/pat/DotMulti.js
com/stevesoft/pat/End.js
com/stevesoft/pat/FastMulti.js
com/stevesoft/pat/NUnicodeAlpha.js
com/stevesoft/pat/NUnicodeCurrency.js
com/stevesoft/pat/NUnicodeDigit.js
com/stevesoft/pat/NUnicodeMath.js
com/stevesoft/pat/NUnicodePunct.js
com/stevesoft/pat/NUnicodeW.js
com/stevesoft/pat/NUnicodeWhite.js
com/stevesoft/pat/NoPattern.js
com/stevesoft/pat/NullPattern.js
com/stevesoft/pat/Or.js
com/stevesoft/pat/OrMark.js
com/stevesoft/pat/Pattern.js
com/stevesoft/pat/PatternSub.js
com/stevesoft/pat/Pthings.js
com/stevesoft/pat/Range.js
com/stevesoft/pat/RegOpt.js
com/stevesoft/pat/RegRes.js
com/stevesoft/pat/Regex.js
com/stevesoft/pat/Rthings.js
com/stevesoft/pat/StrPos.js
com/stevesoft/pat/StringLike.js
com/stevesoft/pat/SubMark.js
com/stevesoft/pat/UniValidator.js
com/stevesoft/pat/UnicodeAlpha.js
com/stevesoft/pat/UnicodeCurrency.js
com/stevesoft/pat/UnicodeDigit.js
com/stevesoft/pat/UnicodeLower.js
com/stevesoft/pat/UnicodeMath.js
com/stevesoft/pat/UnicodePunct.js
com/stevesoft/pat/UnicodeUpper.js
com/stevesoft/pat/UnicodeW.js
com/stevesoft/pat/UnicodeWhite.js
com/stevesoft/pat/Validator.js
com/stevesoft/pat/oneChar.js
com/stevesoft/pat/parsePerl.js
com/stevesoft/pat/patInf.js
com/stevesoft/pat/patInt.js
com/stevesoft/pat/wrap/StringWrap.js
jalview/analysis/AAFrequency.js
jalview/analysis/AlignSeq.js
jalview/analysis/AlignmentAnnotationUtils.js
jalview/analysis/AlignmentUtils.js
jalview/analysis/AnnotationSorter.js
jalview/analysis/CodingUtils.js
jalview/analysis/CodonComparator.js
jalview/analysis/Conservation.js
jalview/analysis/CrossRef.js
jalview/analysis/NJTree.js
jalview/analysis/PCA.js
jalview/analysis/SeqsetUtils.js
jalview/analysis/TreeBuilder.js
jalview/analysis/TreeModel.js
jalview/analysis/scoremodels/DistanceScoreModel.js
jalview/analysis/scoremodels/FeatureDistanceModel.js
jalview/analysis/scoremodels/PIDModel.js
jalview/analysis/scoremodels/ScoreMatrix.js
jalview/analysis/scoremodels/ScoreModels.js
jalview/analysis/scoremodels/SimilarityParams.js
jalview/analysis/scoremodels/SimilarityScoreModel.js
jalview/api/AlignCalcManagerI.js
jalview/api/AlignCalcWorkerI.js
jalview/api/AlignViewControllerGuiI.js
jalview/api/AlignViewControllerI.js
jalview/api/AlignViewportI.js
jalview/api/AlignmentColsCollectionI.js
jalview/api/AlignmentRowsCollectionI.js
jalview/api/AlignmentViewPanel.js
jalview/api/BuildDetailsI.js
jalview/api/DBRefEntryI.js
jalview/api/FeatureColourI.js
jalview/api/FeatureRenderer.js
jalview/api/FeatureSettingsControllerI.js
jalview/api/FeatureSettingsModelI.js
jalview/api/FeaturesDisplayedI.js
jalview/api/FeaturesSourceI.js
jalview/api/OOMHandlerI.js
jalview/api/RendererListenerI.js
jalview/api/RotatableCanvasI.js
jalview/api/SequenceRenderer.js
jalview/api/SequenceStructureBinding.js
jalview/api/SplitContainerI.js
jalview/api/StructureSelectionManagerProvider.js
jalview/api/ViewStyleI.js
jalview/api/analysis/PairwiseScoreModelI.js
jalview/api/analysis/ScoreModelI.js
jalview/api/analysis/SimilarityParamsI.js
jalview/api/structures/JalviewStructureDisplayI.js
jalview/bin/ArgsParser.js
jalview/bin/BuildDetails.js
jalview/bin/Cache.js
jalview/bin/Jalview.js
jalview/commands/CommandI.js
jalview/commands/EditCommand.js
jalview/controller/AlignViewController.js
jalview/datamodel/ASequence.js
jalview/datamodel/ASequenceI.js
jalview/datamodel/AlignedCodon.js
jalview/datamodel/AlignedCodonFrame.js
jalview/datamodel/Alignment.js
jalview/datamodel/AlignmentAnnotation.js
jalview/datamodel/AlignmentI.js
jalview/datamodel/AlignmentView.js
jalview/datamodel/AllColsCollection.js
jalview/datamodel/AllColsIterator.js
jalview/datamodel/AllRowsCollection.js
jalview/datamodel/AllRowsIterator.js
jalview/datamodel/AnnotatedCollectionI.js
jalview/datamodel/Annotation.js
jalview/datamodel/BinaryNode.js
jalview/datamodel/CigarArray.js
jalview/datamodel/CigarBase.js
jalview/datamodel/CigarSimple.js
jalview/datamodel/ColumnSelection.js
jalview/datamodel/ContiguousI.js
jalview/datamodel/DBRefEntry.js
jalview/datamodel/DBRefSource.js
jalview/datamodel/GraphLine.js
jalview/datamodel/HiddenColumns.js
jalview/datamodel/HiddenColumnsCursor.js
jalview/datamodel/HiddenCursorPosition.js
jalview/datamodel/HiddenSequences.js
jalview/datamodel/Mapping.js
jalview/datamodel/PDBEntry.js
jalview/datamodel/Profile.js
jalview/datamodel/ProfileI.js
jalview/datamodel/Profiles.js
jalview/datamodel/ProfilesI.js
jalview/datamodel/Range.js
jalview/datamodel/RangeIterator.js
jalview/datamodel/ResidueCount.js
jalview/datamodel/SearchResultMatchI.js
jalview/datamodel/SearchResults.js
jalview/datamodel/SearchResultsI.js
jalview/datamodel/SeqCigar.js
jalview/datamodel/Sequence.js
jalview/datamodel/SequenceCollectionI.js
jalview/datamodel/SequenceCursor.js
jalview/datamodel/SequenceFeature.js
jalview/datamodel/SequenceGroup.js
jalview/datamodel/SequenceI.js
jalview/datamodel/SequenceNode.js
jalview/datamodel/SequencePoint.js
jalview/datamodel/features/FeatureAttributes.js
jalview/datamodel/features/FeatureLocationI.js
jalview/datamodel/features/FeatureMatcher.js
jalview/datamodel/features/FeatureMatcherI.js
jalview/datamodel/features/FeatureMatcherSet.js
jalview/datamodel/features/FeatureMatcherSetI.js
jalview/datamodel/features/FeatureStore.js
jalview/datamodel/features/RangeComparator.js
jalview/datamodel/features/SequenceFeatures.js
jalview/datamodel/features/SequenceFeaturesI.js
jalview/ext/android/ContainerHelpers.js
jalview/ext/android/SparseShortArray.js
jalview/ext/ensembl/EnsemblData.js
jalview/ext/ensembl/EnsemblGene.js
jalview/ext/ensembl/EnsemblGenomes.js
jalview/ext/ensembl/EnsemblRestClient.js
jalview/ext/ensembl/EnsemblSeqProxy.js
jalview/ext/ensembl/EnsemblSequenceFetcher.js
jalview/ext/jmol/JalviewJmolBinding.js
jalview/ext/jmol/JmolCommands.js
jalview/ext/jmol/JmolParser.js
jalview/fts/api/FTSData.js
jalview/fts/api/FTSDataColumnI.js
jalview/fts/api/FTSRestClientI.js
jalview/fts/api/GFTSPanelI.js
jalview/fts/core/DecimalFormatTableCellRenderer.js
jalview/fts/core/FTSDataColumnPreferences.js
jalview/fts/core/FTSRestClient.js
jalview/fts/core/FTSRestRequest.js
jalview/fts/core/FTSRestResponse.js
jalview/fts/core/GFTSPanel.js
jalview/fts/service/pdb/PDBFTSPanel.js
jalview/fts/service/pdb/PDBFTSRestClient.js
jalview/fts/service/uniprot/UniProtFTSRestClient.js
jalview/fts/service/uniprot/UniprotFTSPanel.js
jalview/gui/AlignFrame.js
jalview/gui/AlignViewport.js
jalview/gui/AlignmentPanel.js
jalview/gui/AnnotationColourChooser.js
jalview/gui/AnnotationColumnChooser.js
jalview/gui/AnnotationLabels.js
jalview/gui/AnnotationPanel.js
jalview/gui/AnnotationRowFilter.js
jalview/gui/AppJmol.js
jalview/gui/AppJmolBinding.js
jalview/gui/CalculationChooser.js
jalview/gui/ColourMenuHelper.js
jalview/gui/ComboBoxTooltipRenderer.js
jalview/gui/Desktop.js
jalview/gui/FeatureIcon.js
jalview/gui/FeatureRenderer.js
jalview/gui/FeatureSettings.js
jalview/gui/FeatureTypeSettings.js
jalview/gui/IProgressIndicator.js
jalview/gui/IdCanvas.js
jalview/gui/IdPanel.js
jalview/gui/IdwidthAdjuster.js
jalview/gui/JalviewChangeSupport.js
jalview/gui/JalviewDialog.js
jalview/gui/JvOptionPane.js
jalview/gui/JvSwingUtils.js
jalview/gui/OverviewCanvas.js
jalview/gui/OverviewPanel.js
jalview/gui/PCAPanel.js
jalview/gui/PaintRefresher.js
jalview/gui/PairwiseAlignPanel.js
jalview/gui/PopupMenu.js
jalview/gui/Preferences.js
jalview/gui/ProgressBar.js
jalview/gui/ProgressPanel.js
jalview/gui/RotatableCanvas.js
jalview/gui/ScalePanel.js
jalview/gui/SeqCanvas.js
jalview/gui/SeqPanel.js
jalview/gui/SequenceFetcher.js
jalview/gui/SequenceRenderer.js
jalview/gui/SplitFrame.js
jalview/gui/StructureChooser.js
jalview/gui/StructureViewer.js
jalview/gui/StructureViewerBase.js
jalview/gui/TreeCanvas.js
jalview/gui/TreePanel.js
jalview/gui/UserDefinedColours.js
jalview/gui/ViewSelectionMenu.js
jalview/io/AlignFile.js
jalview/io/AlignmentFileReaderI.js
jalview/io/AlignmentFileWriterI.js
jalview/io/AlignmentProperties.js
jalview/io/AppletFormatAdapter.js
jalview/io/ClustalFile.js
jalview/io/DataSourceType.js
jalview/io/FastaFile.js
jalview/io/FeaturesFile.js
jalview/io/FileFormat.js
jalview/io/FileFormatI.js
jalview/io/FileFormats.js
jalview/io/FileLoader.js
jalview/io/FileParse.js
jalview/io/FormatAdapter.js
jalview/io/IdentifyFile.js
jalview/io/JalviewFileChooser.js
jalview/io/JalviewFileFilter.js
jalview/io/JalviewFileView.js
jalview/io/PDBFeatureSettings.js
jalview/io/PIRFile.js
jalview/io/ScoreMatrixFile.js
jalview/io/SequenceAnnotationReport.js
jalview/io/StructureFile.js
jalview/io/cache/JvCacheableInputBox.js
jalview/javascript/json/JSON.js
jalview/javascript/log4j/ConsoleAppender.js
jalview/javascript/log4j/Layout.js
jalview/javascript/log4j/Level.js
jalview/javascript/log4j/Logger.js
jalview/javascript/log4j/Priority.js
jalview/javascript/log4j/SimpleLayout.js
jalview/javascript/log4j/spi/OptionHandler.js
jalview/javascript/web/Client.js
jalview/javascript/web/ClientResponse.js
jalview/javascript/web/WebResource.js
jalview/jbgui/GAlignFrame.js
jalview/jbgui/GAlignmentPanel.js
jalview/jbgui/GDesktop.js
jalview/jbgui/GPCAPanel.js
jalview/jbgui/GPairwiseAlignPanel.js
jalview/jbgui/GPreferences.js
jalview/jbgui/GSplitFrame.js
jalview/jbgui/GStructureChooser.js
jalview/jbgui/GStructureViewer.js
jalview/jbgui/GTreePanel.js
jalview/jbgui/GUserDefinedColours.js
jalview/math/Matrix.js
jalview/math/MatrixI.js
jalview/math/RotatableMatrix.js
jalview/renderer/AnnotationRenderer.js
jalview/renderer/AwtRenderPanelI.js
jalview/renderer/OverviewRenderer.js
jalview/renderer/OverviewResColourFinder.js
jalview/renderer/ResidueColourFinder.js
jalview/renderer/ResidueShader.js
jalview/renderer/ResidueShaderI.js
jalview/renderer/ScaleRenderer.js
jalview/renderer/seqfeatures/FeatureColourFinder.js
jalview/renderer/seqfeatures/FeatureRenderer.js
jalview/schemes/AnnotationColourGradient.js
jalview/schemes/Blosum62ColourScheme.js
jalview/schemes/BuriedColourScheme.js
jalview/schemes/ClustalxColourScheme.js
jalview/schemes/ColourSchemeI.js
jalview/schemes/ColourSchemeProperty.js
jalview/schemes/ColourSchemes.js
jalview/schemes/Consensus.js
jalview/schemes/FeatureColour.js
jalview/schemes/FeatureSettingsAdapter.js
jalview/schemes/FollowerColourScheme.js
jalview/schemes/HelixColourScheme.js
jalview/schemes/HydrophobicColourScheme.js
jalview/schemes/JalviewColourScheme.js
jalview/schemes/NucleotideColourScheme.js
jalview/schemes/PIDColourScheme.js
jalview/schemes/PurinePyrimidineColourScheme.js
jalview/schemes/RNAHelicesColour.js
jalview/schemes/ResidueColourScheme.js
jalview/schemes/ResidueProperties.js
jalview/schemes/ScoreColourScheme.js
jalview/schemes/StrandColourScheme.js
jalview/schemes/TCoffeeColourScheme.js
jalview/schemes/TaylorColourScheme.js
jalview/schemes/TurnColourScheme.js
jalview/schemes/ZappoColourScheme.js
jalview/structure/AtomSpec.js
jalview/structure/CommandListener.js
jalview/structure/SelectionListener.js
jalview/structure/SelectionSource.js
jalview/structure/SequenceListener.js
jalview/structure/StructureImportSettings.js
jalview/structure/StructureListener.js
jalview/structure/StructureMapping.js
jalview/structure/StructureMappingcommandSet.js
jalview/structure/StructureSelectionManager.js
jalview/structure/VamsasSource.js
jalview/structures/models/AAStructureBindingModel.js
jalview/structures/models/SequenceStructureBindingModel.js
jalview/urls/CustomUrlProvider.js
jalview/urls/IdOrgSettings.js
jalview/urls/IdentifiersUrlProvider.js
jalview/urls/UrlLinkDisplay.js
jalview/urls/UrlLinkTableModel.js
jalview/urls/UrlProvider.js
jalview/urls/UrlProviderImpl.js
jalview/urls/api/UrlProviderFactoryI.js
jalview/urls/api/UrlProviderI.js
jalview/urls/desktop/DesktopUrlProviderFactory.js
jalview/util/CaseInsensitiveString.js
jalview/util/ColorUtils.js
jalview/util/Comparison.js
jalview/util/DBRefUtils.js
jalview/util/Format.js
jalview/util/JSONUtils.js
jalview/util/LinkedIdentityHashSet.js
jalview/util/MapList.js
jalview/util/MappingUtils.js
jalview/util/MessageManager.js
jalview/util/ParseHtmlBodyAndLinks.js
jalview/util/Platform.js
jalview/util/QuickSort.js
jalview/util/ShiftList.js
jalview/util/SparseCount.js
jalview/util/StringUtils.js
jalview/util/UrlLink.js
jalview/util/dialogrunner/DialogRunnerI.js
jalview/util/matcher/Condition.js
jalview/util/matcher/Matcher.js
jalview/util/matcher/MatcherI.js
jalview/viewmodel/AlignmentViewport.js
jalview/viewmodel/OverviewDimensions.js
jalview/viewmodel/OverviewDimensionsShowHidden.js
jalview/viewmodel/PCAModel.js
jalview/viewmodel/ViewportListenerI.js
jalview/viewmodel/ViewportProperties.js
jalview/viewmodel/ViewportRanges.js
jalview/viewmodel/annotationfilter/AnnotationFilterParameter.js
jalview/viewmodel/seqfeatures/FeatureRendererModel.js
jalview/viewmodel/seqfeatures/FeatureRendererSettings.js
jalview/viewmodel/seqfeatures/FeaturesDisplayed.js
jalview/viewmodel/styles/ViewStyle.js
jalview/workers/AlignCalcManager.js
jalview/workers/AlignCalcWorker.js
jalview/workers/ComplementConsensusThread.js
jalview/workers/ConsensusThread.js
jalview/workers/ConservationThread.js
jalview/ws/SequenceFetcher.js
jalview/ws/dbsources/EbiFileRetrievedProxy.js
jalview/ws/dbsources/EmblCdsSource.js
jalview/ws/dbsources/EmblSource.js
jalview/ws/dbsources/EmblXmlSource.js
jalview/ws/dbsources/Pdb.js
jalview/ws/dbsources/Pfam.js
jalview/ws/dbsources/PfamFull.js
jalview/ws/dbsources/PfamSeed.js
jalview/ws/dbsources/Rfam.js
jalview/ws/dbsources/RfamSeed.js
jalview/ws/dbsources/Uniprot.js
jalview/ws/dbsources/Xfam.js
jalview/ws/ebi/EBIFetchClient.js
jalview/ws/seqfetcher/ASequenceFetcher.js
jalview/ws/seqfetcher/DbSourceProxy.js
jalview/ws/seqfetcher/DbSourceProxyImpl.js
jalview/ws/sifts/SiftsSettings.js
jalview/xml/binding/uniprot/CitationType.js
jalview/xml/binding/uniprot/CommentType.js
jalview/xml/binding/uniprot/ConsortiumType.js
jalview/xml/binding/uniprot/DbReferenceType.js
jalview/xml/binding/uniprot/Entry.js
jalview/xml/binding/uniprot/EventType.js
jalview/xml/binding/uniprot/EvidenceType.js
jalview/xml/binding/uniprot/EvidencedStringType.js
jalview/xml/binding/uniprot/FeatureType.js
jalview/xml/binding/uniprot/GeneNameType.js
jalview/xml/binding/uniprot/GeneType.js
jalview/xml/binding/uniprot/IsoformType.js
jalview/xml/binding/uniprot/KeywordType.js
jalview/xml/binding/uniprot/LocationType.js
jalview/xml/binding/uniprot/MoleculeType.js
jalview/xml/binding/uniprot/NameListType.js
jalview/xml/binding/uniprot/OrganismNameType.js
jalview/xml/binding/uniprot/OrganismType.js
jalview/xml/binding/uniprot/PersonType.js
jalview/xml/binding/uniprot/PositionType.js
jalview/xml/binding/uniprot/PropertyType.js
jalview/xml/binding/uniprot/ProteinExistenceType.js
jalview/xml/binding/uniprot/ProteinType.js
jalview/xml/binding/uniprot/ReferenceType.js
jalview/xml/binding/uniprot/SequenceType.js
jalview/xml/binding/uniprot/SourceDataType.js
jalview/xml/binding/uniprot/SourceType.js
jalview/xml/binding/uniprot/SubcellularLocationType.js
jalview/xml/binding/uniprot/Uniprot.js
java/applet/AppletContext.js
java/applet/AppletStub.js
java/applet/JSApplet.js
java/awt/AWTEvent.js
java/awt/AWTEventMulticaster.js
java/awt/AWTKeyStroke.js
java/awt/ActiveEvent.js
java/awt/Adjustable.js
java/awt/AlphaComposite.js
java/awt/BasicStroke.js
java/awt/BorderLayout.js
java/awt/CardLayout.js
java/awt/Color.js
java/awt/Component.js
java/awt/ComponentOrientation.js
java/awt/Composite.js
java/awt/Container.js
java/awt/ContainerOrderFocusTraversalPolicy.js
java/awt/Cursor.js
java/awt/DefaultFocusTraversalPolicy.js
java/awt/DefaultKeyboardFocusManager.js
java/awt/Dialog.js
java/awt/Dimension.js
java/awt/EventDispatchThread.js
java/awt/EventFilter.js
java/awt/EventQueue.js
java/awt/EventQueueItem.js
java/awt/FlowLayout.js
java/awt/FocusTraversalPolicy.js
java/awt/Font.js
java/awt/FontMetrics.js
java/awt/GraphicsCallback.js
java/awt/GraphicsConfiguration.js
java/awt/GraphicsDevice.js
java/awt/GraphicsEnvironment.js
java/awt/GridBagConstraints.js
java/awt/GridBagLayout.js
java/awt/GridBagLayoutInfo.js
java/awt/GridLayout.js
java/awt/Image.js
java/awt/Insets.js
java/awt/ItemSelectable.js
java/awt/JSComponent.js
java/awt/JSDialog.js
java/awt/JSFrame.js
java/awt/JSPanel.js
java/awt/KeyEventDispatcher.js
java/awt/KeyEventPostProcessor.js
java/awt/KeyboardFocusManager.js
java/awt/LayoutManager.js
java/awt/LayoutManager2.js
java/awt/LightweightDispatcher.js
java/awt/Paint.js
java/awt/Point.js
java/awt/Queue.js
java/awt/Rectangle.js
java/awt/RenderingHints.js
java/awt/SentEvent.js
java/awt/Shape.js
java/awt/Stroke.js
java/awt/Toolkit.js
java/awt/Transparency.js
java/awt/VKCollection.js
java/awt/Window.js
java/awt/color/ColorSpace.js
java/awt/datatransfer/ClipboardOwner.js
java/awt/datatransfer/FlavorMap.js
java/awt/datatransfer/FlavorTable.js
java/awt/datatransfer/SystemFlavorMap.js
java/awt/dnd/DropTarget.js
java/awt/dnd/DropTargetContext.js
java/awt/dnd/DropTargetListener.js
java/awt/dnd/peer/DropTargetPeer.js
java/awt/event/AWTEventListener.js
java/awt/event/ActionEvent.js
java/awt/event/ActionListener.js
java/awt/event/AdjustmentEvent.js
java/awt/event/AdjustmentListener.js
java/awt/event/ComponentAdapter.js
java/awt/event/ComponentEvent.js
java/awt/event/ComponentListener.js
java/awt/event/ContainerEvent.js
java/awt/event/ContainerListener.js
java/awt/event/FocusAdapter.js
java/awt/event/FocusEvent.js
java/awt/event/FocusListener.js
java/awt/event/HierarchyBoundsListener.js
java/awt/event/HierarchyListener.js
java/awt/event/InputEvent.js
java/awt/event/InputMethodListener.js
java/awt/event/InvocationEvent.js
java/awt/event/ItemEvent.js
java/awt/event/ItemListener.js
java/awt/event/KeyAdapter.js
java/awt/event/KeyEvent.js
java/awt/event/KeyListener.js
java/awt/event/MouseAdapter.js
java/awt/event/MouseEvent.js
java/awt/event/MouseListener.js
java/awt/event/MouseMotionAdapter.js
java/awt/event/MouseMotionListener.js
java/awt/event/MouseWheelListener.js
java/awt/event/TextListener.js
java/awt/event/WindowAdapter.js
java/awt/event/WindowEvent.js
java/awt/event/WindowFocusListener.js
java/awt/event/WindowListener.js
java/awt/event/WindowStateListener.js
java/awt/font/FontRenderContext.js
java/awt/font/TextAttribute.js
java/awt/geom/AffineTransform.js
java/awt/geom/Dimension2D.js
java/awt/geom/Path2D.js
java/awt/geom/PathIterator.js
java/awt/geom/Point2D.js
java/awt/geom/RectIterator.js
java/awt/geom/Rectangle2D.js
java/awt/geom/RectangularShape.js
java/awt/image/BufferedImage.js
java/awt/image/ColorModel.js
java/awt/image/DataBuffer.js
java/awt/image/DataBufferInt.js
java/awt/image/DirectColorModel.js
java/awt/image/ImageConsumer.js
java/awt/image/ImageObserver.js
java/awt/image/ImageProducer.js
java/awt/image/PackedColorModel.js
java/awt/image/PixelGrabber.js
java/awt/image/Raster.js
java/awt/image/RenderedImage.js
java/awt/image/SampleModel.js
java/awt/image/SinglePixelPackedSampleModel.js
java/awt/image/WritableRaster.js
java/awt/peer/ComponentPeer.js
java/awt/peer/ContainerPeer.js
java/awt/peer/DialogPeer.js
java/awt/peer/FramePeer.js
java/awt/peer/KeyboardFocusManagerPeer.js
java/awt/peer/LightweightPeer.js
java/awt/peer/WindowPeer.js
java/awt/print/Printable.js
java/beans/ChangeListenerMap.js
java/beans/PropertyChangeEvent.js
java/beans/PropertyChangeListener.js
java/beans/PropertyChangeSupport.js
java/io/BufferedInputStream.js
java/io/BufferedReader.js
java/io/BufferedWriter.js
java/io/ByteArrayInputStream.js
java/io/ByteArrayOutputStream.js
java/io/Closeable.js
java/io/File.js
java/io/FileDescriptor.js
java/io/FileInputStream.js
java/io/FileOutputStream.js
java/io/FileReader.js
java/io/FileSystem.js
java/io/FilenameFilter.js
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java/io/PrintStream.js
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java/net/HttpURLConnection.js
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java/text/DigitList.js
java/text/FieldPosition.js
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java/text/MessageFormat.js
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java/util/AbstractCollection.js
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java/util/AbstractQueue.js
java/util/AbstractSequentialList.js
java/util/AbstractSet.js
java/util/ArrayDeque.js
java/util/ArrayList.js
java/util/Arrays.js
java/util/BitSet.js
java/util/Calendar.js
java/util/Collection.js
java/util/Collections.js
java/util/ComparableTimSort.js
java/util/Comparator.js
java/util/Deque.js
java/util/Dictionary.js
java/util/DualPivotQuicksort.js
java/util/Enumeration.js
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java/util/EventObject.js
java/util/Formatter.js
java/util/GregorianCalendar.js
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javajs/util/AjaxURLStreamHandler.js
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javax/swing/JApplet.js
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javax/swing/JColorChooser.js
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javax/swing/JComponent.js
javax/swing/JDesktopPane.js
javax/swing/JDialog.js
javax/swing/JFileChooser.js
javax/swing/JFormattedTextField.js
javax/swing/JFrame.js
javax/swing/JInternalFrame.js
javax/swing/JLabel.js
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javax/swing/JMenu.js
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javax/swing/JOptionPane.js
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javax/swing/JProgressBar.js
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javax/swing/JRootPane.js
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javax/swing/JToggleButton.js
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javax/swing/MenuElement.js
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javax/swing/MutableComboBoxModel.js
javax/swing/Popup.js
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javax/swing/RepaintManager.js
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javax/swing/Timer.js
javax/swing/ToolTipManager.js
javax/swing/UIDefaults.js
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javax/swing/border/MatteBorder.js
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javax/swing/colorchooser/AbstractColorChooserPanel.js
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javax/swing/colorchooser/ColorChooserComponentFactory.js
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javax/swing/colorchooser/DefaultRGBChooserPanel.js
javax/swing/colorchooser/DefaultSwatchChooserPanel.js
javax/swing/colorchooser/MainSwatchPanel.js
javax/swing/colorchooser/RecentSwatchPanel.js
javax/swing/colorchooser/SmartGridLayout.js
javax/swing/colorchooser/SwatchPanel.js
javax/swing/event/AncestorEvent.js
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javax/swing/tree/TreeNode.js
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javax/xml/bind/ContextFinder.js
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javax/xml/bind/JAXBContextFactory.js
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javax/xml/bind/ModuleUtil.js
javax/xml/bind/ServiceLoaderUtil.js
javax/xml/bind/Unmarshaller.js
javax/xml/bind/ValidationEventHandler.js
javax/xml/bind/helpers/AbstractUnmarshallerImpl.js
javax/xml/bind/helpers/DefaultValidationEventHandler.js
javax/xml/datatype/XMLGregorianCalendar.js
javax/xml/namespace/QName.js
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mc_view/Atom.js
mc_view/Bond.js
mc_view/PDBChain.js
mc_view/Residue.js
net/miginfocom/layout/AC.js
net/miginfocom/layout/AnimSpec.js
net/miginfocom/layout/BoundSize.js
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org/jmol/api/Translator.js
org/jmol/atomdata/AtomDataServer.js
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org/jmol/awt/AwtFile.js
org/jmol/awt/AwtFont.js
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org/jmol/c/CBK.js
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org/jmol/modelset/AtomIteratorWithinModel.js
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org/jmol/thread/JmolThread.js
org/jmol/translation/PO.js
org/jmol/util/BSUtil.js
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org/jmol/util/C.js
org/jmol/util/ColorEncoder.js
org/jmol/util/CommandHistory.js
org/jmol/util/DefaultLogger.js
org/jmol/util/Edge.js
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org/jmol/util/GData.js
org/jmol/util/Geodesic.js
org/jmol/util/Int2IntHash.js
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org/jmol/util/Logger.js
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org/jmol/util/Normix.js
org/jmol/util/Point3fi.js
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org/jmol/util/Rgb16.js
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org/jmol/viewer/FileManager.js
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org/xml/sax/InputSource.js
org/xml/sax/Parser.js
org/xml/sax/XMLReader.js
org/xml/sax/ext/Attributes2.js
sun/awt/AWTAccessor.js
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sun/awt/AppContext.js
sun/awt/CausedFocusEvent.js
sun/awt/ComponentFactory.js
sun/awt/EventQueueItem.js
sun/awt/KeyboardFocusManagerPeerProvider.js
sun/awt/MostRecentKeyValue.js
sun/awt/MostRecentThreadAppContext.js
sun/awt/PaintEventDispatcher.js
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sun/awt/RequestFocusController.js
sun/awt/SunGraphicsCallback.js
sun/awt/SunToolkit.js
sun/awt/WindowClosingListener.js
sun/awt/WindowClosingSupport.js
sun/awt/image/DataStealer.js
sun/awt/image/IntegerComponentRaster.js
sun/awt/image/IntegerInterleavedRaster.js
sun/awt/image/OffScreenImageSource.js
sun/awt/image/SunWritableRaster.js
sun/font/AttributeValues.js
sun/font/EAttribute.js
sun/font/FontDesignMetrics.js
sun/java2d/StateTrackable.js
sun/java2d/StateTrackableDelegate.js
sun/security/action/GetPropertyAction.js
sun/swing/DefaultLookup.js
sun/swing/StringUIClientPropertyKey.js
sun/swing/SwingLazyValue.js
sun/swing/SwingUtilities2.js
sun/swing/UIAction.js
sun/swing/UIClientPropertyKey.js
sun/swing/table/DefaultTableCellHeaderRenderer.js
sun/text/resources/FormatData.js
sun/text/resources/FormatData_en.js
sun/util/calendar/AbstractCalendar.js
sun/util/calendar/BaseCalendar.js
sun/util/calendar/CalendarDate.js
sun/util/calendar/CalendarSystem.js
sun/util/calendar/CalendarUtils.js
sun/util/calendar/Gregorian.js
sun/util/calendar/ZoneInfo.js
sun/util/resources/LocaleData.js
swingjs/JSAbstractDocument.js
swingjs/JSApp.js
swingjs/JSApplet.js
swingjs/JSAppletThread.js
swingjs/JSAppletViewer.js
swingjs/JSDocumentEvent.js
swingjs/JSFocusPeer.js
swingjs/JSFontMetrics.js
swingjs/JSFrameViewer.js
swingjs/JSGraphics2D.js
swingjs/JSGraphicsCompositor.js
swingjs/JSGraphicsConfiguration.js
swingjs/JSGraphicsEnvironment.js
swingjs/JSImage.js
swingjs/JSImagekit.js
swingjs/JSKeyEvent.js
swingjs/JSMenuManager.js
swingjs/JSMouse.js
swingjs/JSPlainDocument.js
swingjs/JSScreenDevice.js
swingjs/JSTempFile.js
swingjs/JSThreadGroup.js
swingjs/JSToolkit.js
swingjs/JSUtil.js
swingjs/a2s/Dialog.js
swingjs/api/Interface.js
swingjs/api/JSMinimalAbstractDocument.js
swingjs/api/js/DOMNode.js
swingjs/api/js/HTML5CanvasContext2D.js
swingjs/api/js/JSInterface.js
swingjs/jquery/JQueryUI.js
swingjs/json/JSON.js
swingjs/plaf/BasicArrowButton.js
swingjs/plaf/BasicHTML.js
swingjs/plaf/ButtonListener.js
swingjs/plaf/CellHolder.js
swingjs/plaf/CenterLayout.js
swingjs/plaf/DefaultMenuLayout.js
swingjs/plaf/HTML5LookAndFeel.js
swingjs/plaf/JSAppletUI.js
swingjs/plaf/JSButtonUI.js
swingjs/plaf/JSCheckBoxMenuItemUI.js
swingjs/plaf/JSCheckBoxUI.js
swingjs/plaf/JSColorChooserUI.js
swingjs/plaf/JSComboBoxUI.js
swingjs/plaf/JSComponentUI.js
swingjs/plaf/JSDesktopIconUI.js
swingjs/plaf/JSDesktopPaneUI.js
swingjs/plaf/JSDialogUI.js
swingjs/plaf/JSEventHandler.js
swingjs/plaf/JSFormattedTextFieldUI.js
swingjs/plaf/JSFrameUI.js
swingjs/plaf/JSGraphicsUtils.js
swingjs/plaf/JSInternalFrameUI.js
swingjs/plaf/JSLabelUI.js
swingjs/plaf/JSLayeredPaneUI.js
swingjs/plaf/JSLightweightUI.js
swingjs/plaf/JSListUI.js
swingjs/plaf/JSMenuBarUI.js
swingjs/plaf/JSMenuItemUI.js
swingjs/plaf/JSMenuUI.js
swingjs/plaf/JSOptionPaneUI.js
swingjs/plaf/JSPanelUI.js
swingjs/plaf/JSPopupMenuSeparatorUI.js
swingjs/plaf/JSPopupMenuUI.js
swingjs/plaf/JSPopupUI.js
swingjs/plaf/JSProgressBarUI.js
swingjs/plaf/JSRadioButtonMenuItemUI.js
swingjs/plaf/JSRadioButtonUI.js
swingjs/plaf/JSRootPaneUI.js
swingjs/plaf/JSScrollBarUI.js
swingjs/plaf/JSScrollPaneUI.js
swingjs/plaf/JSSeparatorUI.js
swingjs/plaf/JSSliderUI.js
swingjs/plaf/JSSpinnerUI.js
swingjs/plaf/JSSplitPaneUI.js
swingjs/plaf/JSTabbedPaneUI.js
swingjs/plaf/JSTableHeaderUI.js
swingjs/plaf/JSTableUI.js
swingjs/plaf/JSTextAreaUI.js
swingjs/plaf/JSTextFieldUI.js
swingjs/plaf/JSTextUI.js
swingjs/plaf/JSTextViewUI.js
swingjs/plaf/JSToolTipUI.js
swingjs/plaf/JSViewportUI.js
swingjs/plaf/JSWindowUI.js
swingjs/plaf/LazyActionMap.js
swingjs/plaf/Resizer.js
swingjs/plaf/TextListener.js
swingjs/xml/JSJAXBClass.js
swingjs/xml/JSJAXBContext.js
swingjs/xml/JSJAXBContextFactory.js
swingjs/xml/JSJAXBField.js
swingjs/xml/JSJAXBUnmarshaller.js
swingjs/xml/JSSAXAttributes.js
swingjs/xml/JSSAXParser.js
swingjs/xml/JSXMLGregorianCalendarImpl.js
swingjs/xml/JSXMLInputFactory.js
swingjs/xml/JSXMLStreamReader.js