Invalid target 'calculations' at line 110 of helpTOC.xml
Invalid href featuresFile.html at line 113 of /Users/gmcarstairs/git/jalview/help/html/features/annotationsFormat.html
Invalid href http://www.biodas.org at line 32 of /Users/gmcarstairs/git/jalview/help/html/features/dasfeatures.html
Invalid href http://biodas.org/ at line 32 of /Users/gmcarstairs/git/jalview/help/html/features/dassettings.html
Invalid href ../calculate/sorting.html at line 56 of /Users/gmcarstairs/git/jalview/help/html/features/splitView.html
Invalid href menus/alwview.html at line 78 of /Users/gmcarstairs/git/jalview/help/html/features/splitView.html
Invalid href text-search at line 30 of /Users/gmcarstairs/git/jalview/help/html/features/uniprotqueryfields.html
Invalid href http://varna.lri.fr/index.html at line 30 of /Users/gmcarstairs/git/jalview/help/html/features/varna.html
Invalid href http://www.ebi.ac.uk/help/formats.html at line 36 of /Users/gmcarstairs/git/jalview/help/html/io/index.html
Invalid href features/regionHiding.html at line 162 of /Users/gmcarstairs/git/jalview/help/html/keys.html
Invalid href sqaddrefannot at line 147 of /Users/gmcarstairs/git/jalview/help/html/menus/popupMenu.html
Invalid href http://biojs.io/d/msa at line 236 of /Users/gmcarstairs/git/jalview/help/html/releases.html
Invalid href http://www.well.ox.ac.uk/~valdar/publications.html at line 35 of /Users/gmcarstairs/git/jalview/help/html/webServices/AACon.html
Invalid href http://www.compbio.dundee.ac.uk/JABAWS at line 93 of /Users/gmcarstairs/git/jalview/help/html/webServices/index.html
Invalid href www.javaregex.com at line 86 of /Users/gmcarstairs/git/jalview/help/html/webServices/urllinks.html
Results:
122 distinct help targets
122 help mappings
1 invalid targets
13 unused targets
    seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
    search: html/features/search.html
    newsreader: html/webServices/newsreader.html
    strucprefs: html/features/preferences.html#structure
    subtMatrices.pam250: html/calculations/scorematrices.html#pam250
    cdnafeatures: html/features/codingfeatures.html
    jalarchive: html/features/jalarchive.html
    alformats: html/io/fileformats.html
    popMenuAddref: html/menus/popupMenu.html#addrefannot
    seqmappings: html/features/seqmappings.html
    io.modellerpir: html/io/modellerpir.html
    newkeys: html/features/newkeystrokes.html
    viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
0 invalid map urls
0 invalid image attributes
333 internal href links
7 invalid internal href links
74 external href links
7 invalid external href links