1 89 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 GGAGAGUAGA UGAUUCGCGU UAAGCGUGUG UGAAUGGGAU GUCGUCACAC AACGAAGCGA GAGCGCGGUG AAUCAUUGCA UCCGCUCCA LOOP1 60 61 Crystallography ? ? Angstroms 1 G P 39.406 -40.727 -8.772 O3' 35.728 -40.286 -12.682 2 G P 34.946 -38.900 -12.475 O3' 30.080 -38.122 -13.566 3 A P 29.830 -36.592 -13.144 O3' 25.299 -34.832 -11.157 4 G P 25.525 -33.291 -10.748 O3' 22.725 -31.357 -6.447 5 A P 23.004 -29.821 -6.080 O3' 21.811 -28.069 -1.298 6 G P 21.792 -26.530 -1.767 O3' 24.489 -23.234 1.411 7 U P 24.494 -21.833 0.618 O3' 26.796 -17.886 2.729 8 A P 25.940 -16.593 2.288 O3' 27.995 -11.947 1.918 9 G P 26.631 -11.127 1.714 O3' 25.187 -8.816 -3.450 10 A P 23.765 -8.232 -3.892 O3' 22.114 -8.019 -8.607 11 U P 20.793 -7.127 -8.411 O3' 16.589 -7.608 -11.167 12 G P 15.563 -6.541 -10.537 O3' 10.446 -7.534 -10.495 13 A P 9.719 -6.369 -9.662 O3' 5.301 -7.413 -7.169 14 U P 4.913 -6.043 -6.428 O3' 2.471 -6.216 -1.841 15 U P 2.306 -4.695 -1.355 O3' 2.523 -3.519 3.678 16 C P 2.410 -1.916 3.716 O3' 4.861 0.478 7.750 17 G P 5.097 2.068 7.705 O3' 9.837 5.342 8.056 18 C P 9.957 6.906 7.713 O3' 14.285 9.278 6.633 19 G P 13.701 10.760 6.394 O3' 16.027 13.756 2.831 20 U P 15.167 15.091 3.070 O3' 13.625 17.842 -0.910 21 U P 12.758 18.952 -0.136 O3' 18.055 19.867 1.942 22 A P 19.169 19.634 0.806 O3' 21.578 14.723 -0.062 23 A P 23.185 14.817 -0.069 O3' 24.197 10.234 2.787 24 G P 25.187 9.332 1.904 O3' 23.533 4.428 0.543 25 C P 24.698 3.762 -0.344 O3' 23.832 1.164 -4.830 26 G P 25.358 0.687 -5.012 O3' 27.639 1.163 -9.624 27 U P 29.215 0.976 -9.386 O3' 32.967 2.977 -11.808 28 G P 34.192 2.205 -11.110 O3' 38.926 3.986 -11.102 29 U P 39.673 2.760 -10.388 O3' 43.897 3.593 -7.402 30 G P 44.247 2.191 -6.693 O3' 46.005 2.102 -1.916 31 U P 46.082 0.594 -1.358 O3' 46.014 -0.378 3.660 32 G P 46.093 -1.940 4.026 O3' 42.541 -5.286 7.182 33 A P 42.384 -6.877 7.063 O3' 38.307 -9.190 8.881 34 A P 38.548 -10.772 8.689 O3' 34.569 -13.953 8.211 35 U P 34.833 -15.458 7.714 O3' 32.606 -18.340 3.220 36 G P 33.272 -19.727 3.692 O3' 29.146 -23.892 4.012 37 G P 29.023 -23.774 5.611 O3' 32.904 -25.203 8.677 38 G P 34.031 -24.091 8.410 O3' 38.938 -24.200 8.769 39 A P 39.341 -22.721 8.285 O3' 43.751 -21.471 6.096 40 U P 43.479 -19.903 5.856 O3' 45.395 -17.759 1.488 41 G P 44.930 -16.222 1.586 O3' 43.506 -13.581 -2.651 42 U P 42.831 -12.121 -2.591 O3' 41.294 -10.286 -7.932 43 C P 42.354 -9.284 -8.602 O3' 37.101 -8.296 -10.514 44 G P 36.225 -7.381 -9.523 O3' 31.469 -8.612 -8.166 45 U P 31.072 -7.255 -7.406 O3' 28.607 -6.549 -3.172 46 C P 28.715 -4.958 -2.980 O3' 28.390 -3.209 1.978 47 A P 28.521 -1.606 2.045 O3' 30.414 1.118 5.980 48 C P 30.264 2.613 5.413 O3' 33.914 6.098 6.836 49 A P 33.658 7.488 6.071 O3' 37.349 10.868 4.871 50 C P 36.440 12.000 4.175 O3' 38.419 14.513 0.075 51 A P 37.256 15.394 -0.597 O3' 37.356 16.350 -5.434 52 A P 36.109 17.208 -5.963 O3' 32.771 16.782 -10.663 53 C P 31.552 17.777 -10.378 O3' 27.305 16.113 -12.908 54 G P 26.189 17.220 -12.567 O3' 21.401 15.463 -11.735 55 A P 20.593 16.847 -11.641 O3' 14.995 15.270 -10.886 56 A P 14.099 15.609 -12.176 O3' 11.604 16.216 -7.225 57 G P 12.080 17.523 -6.429 O3' 7.183 20.279 -7.550 58 C P 5.983 21.146 -6.947 O3' 0.457 20.033 -6.497 59 G P -0.544 20.976 -5.664 O3' -5.064 19.435 -4.069 60 A P -5.376 20.880 -3.446 O3' -4.674 20.226 1.852 61 G P -3.473 19.173 1.806 O3' -4.399 14.900 5.084 62 A P -3.268 13.764 4.956 O3' -4.326 8.891 5.778 63 G P -2.954 8.206 5.320 O3' -2.345 6.516 -0.228 64 C P -1.075 5.830 -0.928 O3' -0.362 6.130 -5.741 65 G P 0.975 5.389 -6.226 O3' 5.254 7.641 -9.385 66 C P 6.414 6.540 -9.525 O3' 11.228 8.547 -10.401 67 G P 12.262 7.325 -10.276 O3' 17.393 8.076 -7.688 68 G P 18.588 8.450 -8.699 O3' 17.674 3.102 -7.969 69 U P 17.676 1.931 -6.877 O3' 19.344 2.058 -2.233 70 G P 19.325 0.478 -1.917 O3' 20.086 -1.464 2.724 71 A P 20.065 -3.053 2.482 O3' 18.093 -6.084 6.331 72 A P 18.058 -7.629 5.887 O3' 14.491 -10.888 7.635 73 U P 14.861 -12.252 6.871 O3' 11.261 -15.468 5.182 74 C P 12.050 -16.617 4.382 O3' 9.736 -18.950 0.360 75 A P 10.800 -19.899 -0.381 O3' 10.831 -20.869 -5.373 76 U P 12.149 -21.782 -5.481 O3' 15.150 -21.466 -9.686 77 U P 16.383 -22.407 -9.255 O3' 21.158 -21.098 -10.643 78 G P 22.003 -22.328 -10.053 O3' 26.870 -21.574 -8.157 79 C P 27.394 -22.916 -7.439 O3' 32.738 -22.221 -7.672 80 A P 33.094 -23.432 -8.669 O3' 37.970 -23.709 -10.290 81 U P 38.180 -25.262 -9.938 O3' 42.343 -27.512 -8.310 82 C P 41.594 -28.924 -8.148 O3' 42.976 -31.766 -3.839 83 C P 41.983 -33.022 -3.698 O3' 40.724 -35.051 0.999 84 G P 39.499 -36.072 0.803 O3' 35.976 -36.466 4.801 85 C P 34.990 -37.680 4.429 O3' 30.031 -37.549 5.509 86 U P 29.628 -39.018 5.001 O3' 25.142 -40.312 3.037 87 C P 25.378 -41.854 2.656 O3' 22.860 -43.926 -1.490 88 C P 23.430 -45.414 -1.686 O3' 24.098 -47.533 -6.370 89 A P 24.738 -48.976 -6.070 O3' 28.245 -51.062 -9.390 22 syn 68 syn 1 88 + + c 2 87 + + c 3 86 - - c 4 85 + + c 5 84 W W c 6 37 S H c 8 44 S S t 8 78 H S t 9 77 W W c 10 76 - - c 11 75 - - c 12 74 + + c 13 73 - - c 14 72 - - c 15 71 - - c 16 70 + + c 17 69 W W c 18 67 + + c 19 22 S S c 19 66 + + c 20 65 W W c 23 55 H W t 23 67 W S t 24 54 H S t 26 52 W W c 27 51 - - c 28 50 + + c 29 49 - - c 30 48 + + c 31 47 - - c 32 46 + + c 33 45 - - c 34 44 W W c 35 42 W H t 37 83 + + c 38 82 + + c 39 81 - - c 40 80 - - c 41 79 W W c 56 65 S S t 57 64 + + c 58 63 + + c 59 62 W H t 7 35 ! ! ! 8 35 ! ! ! 23 54 ! ! ! 24 69 ! ! ! 35 79 ! ! ! 43 44 ! ! ! 54 55 ! ! ! 56 57 ! ! ! 68 69 ! ! ! 1 88 5 37 83 5 26 52 9 23 55 2 57 64 3 19 66 2 8 78 10 SG1 6 7 SG2 18 18 SG3 21 22 SG4 25 25 SG5 35 36 SG6 42 43 SG7 53 53 SG8 56 56 SG9 60 61 SG10 67 68 SG11 89 89 1 264.792 11.342 2 264.792 30.246 3 264.792 49.149 4 264.792 68.053 5 264.792 86.957 6 276.134 86.957 7 287.476 86.957 8 148.757 221.618 9 143.395 239.745 10 138.033 257.872 11 132.670 275.999 12 127.308 294.126 13 121.946 312.254 14 116.584 330.381 15 111.221 348.508 16 105.859 366.635 17 100.497 384.762 18 53.294 416.207 19 48.034 426.256 20 39.267 443.003 21 219.423 487.713 22 219.423 476.370 23 219.423 465.028 24 219.423 446.125 25 219.423 427.221 26 219.423 389.414 27 219.423 370.510 28 219.423 351.607 29 219.423 332.703 30 219.423 313.800 31 219.423 294.896 32 219.423 275.992 33 219.423 257.089 34 219.423 238.185 35 287.476 124.764 36 276.134 124.764 37 264.792 124.764 38 264.792 143.667 39 264.792 162.571 40 264.792 181.474 41 264.792 200.378 42 276.134 200.378 43 287.476 200.378 44 264.792 238.185 45 264.792 257.089 46 264.792 275.992 47 264.792 294.896 48 264.792 313.800 49 264.792 332.703 50 264.792 351.607 51 264.792 370.510 52 264.792 389.414 53 264.792 408.318 54 264.792 446.125 55 264.792 465.028 56 264.792 476.370 57 21.732 476.499 58 12.965 493.246 59 4.198 509.994 60 0.000 537.223 61 24.408 550.000 62 44.392 531.035 63 53.159 514.288 64 61.927 497.540 65 79.461 464.045 66 88.228 447.297 67 93.488 437.249 68 98.749 427.200 69 56.992 371.893 70 62.354 353.766 71 67.716 335.638 72 73.079 317.511 73 78.441 299.384 74 83.803 281.257 75 89.165 263.130 76 94.527 245.003 77 99.890 226.876 78 105.252 208.749 79 219.423 200.378 80 219.423 181.474 81 219.423 162.571 82 219.423 143.667 83 219.423 124.764 84 219.423 86.957 85 219.423 68.053 86 219.423 49.149 87 219.423 30.246 88 219.423 11.342 89 219.423 0.000