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  1. Jalview
  2. JAL-4440

Jmol view doesn't show all selected structures in 3d structure chooser mapped to sequences

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.4.0
    • Fix Version/s: None
    • Component/s: Structures
    • Labels:
      None

      Description

      Import the following alignment, select all sequences, open the structure chooser, then *select all* sequences that are discovered from 3d-beacons.

      Some of the structures have multple models, and/or alternate conformations, which seems to confuse Jalview, causing NPEs in the Jmol structure viewer binding code (JalviewJmolBinding.java:~788) :
                PDBEntry ppe=getPdbEntry(pe);
                if (ppe==null) {
                  Console.warn("Unexpected null entry for PDBEntry for a structure");
                  continue;
                }
                if (ppe.getFile()==null)
                {
                  Console.warn("Unexpected null entry for file that we just tried to load into Jmol: pdbEntry: "+ppe.toString());
                  continue;
                }

      Problem alignment is at:
      >HNRPK_BOVIN/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHY--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPQS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >HNRPK_RABIT/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHF--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPHS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >HNRPK_MACFA/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHY--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPHS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >DDX1_RAT/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATRGLL-RGKH
      YYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK
      FSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTG-NA
      QVSQTKF--------------------------------LPNAPKALIVEPSRELAEQTLNNVKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM
      HNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDRLWER
      LGKNH--IRTDDVHAKDNTRPGA-NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFM
      QQGGGPDKKG--HQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVATEKEKVWYH--VCSNRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD----EFDGKVTYGQKRAAGGGNYKGHVDILAPTV
      QELAALEKEAQTSFL------------------------HLGYLPNQLFRTF-
      >DDX1_BOVIN/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLT-KGKH
      YYEVSCHDQGL-CRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK
      FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPESFVVKSQHTG-SA
      QVAQTKF--------------------------------LPNAPKALIVEPSRELAEQTLNNVKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRI
      HNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDRLWER
      LGKSH--IRTDEVHAKDNTRPGA-NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFM
      QQGGGPDKKG--HQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD----EFDGKVTYGQKRTLGGGNYKGHVDVLAPTV
      QELAALEKEAQTSFL------------------------HLGYLPNQLFRTF-
      >HNRPK_PONAB/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHY--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPHS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >DDX1_DROME/1-727 ATP-dependent RNA helicase Ddx1
      MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLE
      E----------GKAGKGGAIGGA--VTPWTMSFFDRGNALAVTPDGLRCQSREFKEWHGCRATTGVRGKGKF
      YFEATVTDEGL-CRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLKNQEVS
      FTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQFNFGKTDFKYAPGNGFVGACQAGPEHSKANPITGPAA
      GAPSAKP--------------------------------APNAPQAIIMEPSRELAEQTYNQIEKFKYHLSN
      PEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRL
      HKQIPKITSDGRRLQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDP-QMDTTWQS
      L-RQP--IGTDGVHDRDNVHPGN-HSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLR
      QRG------G--KHYSCVCLH-GDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPF----------
      --------MINVTLPDDKTNYVHRIGRVGRAER----MGLAISLVATVPEKVWYHGEWCKSRGRSCNNTNLT
      EVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVN----DFDGKVVYGQKNLRTGSGYEDHVEQLVPTV
      RKLTELELQSQSLFLKRLKV---------------------------------
      >DDX1_MACFA/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLM-KGKH
      YYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK
      FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG-NA
      QVTQTKF--------------------------------LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLTQGYSDFINRM
      HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDRLWER
      LGKNH--IRTDDVHAKDNTRPGA-NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFM
      QQGGGPDKKG--HQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD----EFDGKVTYGQKRAAGGGSYKGHVDILAPTV
      QELAALEKEAQTSFL------------------------HLGYLPNQLFRTF-
      >HNRPK_HUMAN/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHY--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPHS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >DDX1_CHICK/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQM
      E----------GKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATRGVT-KGKY
      YYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDSYGEEFTMHDTIGCYLDIDKGQIK
      FSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELKFNFGEEDFKFPPKDGYIGLCKAPDGNVVKSQHTG-NA
      QVVQTQN--------------------------------LPNAPKALIVEPSRELAEQTLNNVKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLLQGYSDFINRI
      HSQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPETVHHVVVIVNP-KTDKLWER
      LGKNH--IRTDEVHAKDNTLPGA-NTPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFI
      QQGGGPDRKG--HQFSCVCLH-GDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVAKEKEKVWYH--VCSSRGKGCYNTRLK
      EEGGCTIWYNEMQLLGEIEEHLNCTISQVEPDIKVPVD----DFDGKVTYGQKRALGGGLYKGHVDILAPTV
      QELAALEKEAQTSFL------------------------HLGYLPNQLFRTF-
      >HNRPK_MOUSE/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHY--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPHS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >DDX1_DROVI/1-400 ATP-dependent RNA helicase Ddx1
      ------------------------------------------------------------------------
      ------------------------------------------------------------------------
      ------------------------------------------------------------------------
      ------------------------------------------------------------------------
      ------------------------------------------------------------------------
      -----------------------------------------------------DDEADRLLKQGYTDLIERL
      HKQIPKITSDGCRLQMIVCSATLHAFEVKKMAERLMHFPTWGDLKGEDAVPETVHHVVCMVDP-HTDSSWQQ
      L-RQP--IHTDGVHDHDNVHPTN-QSPETFSQAVKLLKGEYCIRAIDQHKMDRAIIFCRTKQDCDNLEQHLS
      QRG------G--QRFSCVCLH-GDRKPQERKQNLEMFKRQEVKFLICTDVAARGLDITGLPFSKDLKYLSEN
      TLNFPNLAVINITLPDDKSNYVHRIGRVGRPES----MGLAISLVSTVPEKVWYHGEWCKTRGRS-------
      ---GSCIWYNEPNLLAEVEDHLNITIQQVVKSLDVPVN----DFDGKVVYGQKNLNMGTGYEDHVEQLGPTV
      RKQTDLELQSQSLFLKRLKRLNWFDFGLLHDPKYFHGYEYIKYINKLTLKSCV
      >HNRPK_RAT/1-276 Heterogeneous nuclear ribonucleoprotein K
      -----------------------METEQPEETFP--------------------------------------
      ------NTETNGEFGK--------------------------------------------RPAEDME-EEQA
      FKRSRNTDEMVELRILLQSKNAGAVIG---------------------------------------------
      --KGGKN---------------------IKALRTDYNA--------------------------------SV
      SVPDSSG-------------------------------------------PERILSISA-------------
      -------------------------DI---------------------------------------ETIGEI
      LKKIIPTLEEGLQLPSPTATSQL---------------------------------------P---------
      -------LESDAV-------------------------------------------------ECLNYQHY--
      --------KG--SDFDC-----------------------ELRLLIHQSLAGGIIGVKGAKI-KELRENTQT
      TIK-----LFQECCPHS-TDRVVLIG--GKPDRVVECIKIILDLISESPIK---------------------
      ---GRAQPYD-PNFYDETYDYGGFTMM-FDDRRGRPVG---FPMRGRGGFDRMPPGRGG------RPMPPS-
      -----------------------------------------------------
      >DDX1_MOUSE/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRGTRGLL-KGKH
      YYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK
      FSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDNYIVKSQHTG-NA
      QVSQTKF--------------------------------LPNAPKALIVEPSRELAEQTLNNVKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM
      HNQIPQITCDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDKLWER
      LGKNH--IRTDDVHAKDNTRPGA-NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFM
      QQGGGPDKKG--HQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVATEKEKVWYH--VCSNRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD----EFDGKVTYGQKRAAGGGNYKGHVDVLAPTV
      QELAALEKEAQTSFL------------------------HLGYLPNQLFRTF-
      >DDX1_HUMAN/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLM-KGKH
      YYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK
      FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG-NA
      QVTQTKF--------------------------------LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM
      HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDRLWER
      LGKSH--IRTDDVHAKDNTRPGA-NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI
      QQGGGPDKKG--HQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD----EFDGKVTYGQKRAAGGGSYKGHVDILAPTV
      QELAALEKEAQTSFL------------------------HLGYLPNQLFRTF-
      >DDX1_DICDI/1-765 Probable ATP-dependent RNA helicase ddx1
      MSAFEDLGVLPEIIKAIEELDWLLPTPIQTEAIPLILGGGDVLAAAETGSGKTGAFALPILQITYETLNKKA
      EIPIIAPTNTSGEDGTSGGGGGGGGGDTIELDQIDRDKNMAV--DGLICQSRS-SDWCGIKATKGIS-SGKF
      YYESIVRDEGL-CRIGFALKKSSRNIGTDKFSWGYGGTGKKSHESKFIDYGKPFGNNDVIGCYINFDEEIIG
      FTKNGQDFGEAFTF--NSKAGIFYPALVLKNAEMEFNFGSKPMKHDLK-GYKPINQA---ELLIDQQT--ST
      QIDNSKNNNNNNNKKGSGNNKKNKGKDDDKMNDEDNNNKQPRKTLSLIIEPTRELADQAYSAILNFSKYLDS
      PKIQVSLCIGGEKSNGGRNKIEG--DIIIGTPGRLESLVKEGSIDLSSIKFFVLDEADQLIDDNLA-IVNFI
      YNKLPI----GQNLQVLFFSATLHSTKVIKFCEQITKNPTWVDLKGRDFIPDLITHAYVKADPIKFESLWRN
      S-ENPLRIRTDGVHASDVQQFGKLKEPEQKSEAIKLLKAQLLLKCIQSFKMDQAIIFARTRLDCDHIHQFLK
      DAGGG-NTSGLEGEFSSTVLHGGDNISRARKDNLEKFRNGDVRFLICTDVAARGIDIRGLPY----------
      --------MINYTLPESFEDYIHRVGRVGRSDR----IGLAISLVAYEQEKVWYH--TCRDKGKGCHNTKLT
      ENGGCCIWYDEPQLFTAIQE--NIGPIELDSDFQLPKDMKQLNFGGST----KLTGASADYKPHTEELRSRV
      LQLSQLEETIQIDYLTLPKRII-----------------KLK-----------
      >DDX1_XENTR/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKTSVKTGSTVLNKWQMNPYDRGSSFAIGSDGLCCQSREIKEWHGCRSTRGVN-KGKY
      YYEVSCHDQGL-CRVGWSTLQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYIDIDNGTVK
      YSKNGKDLGLAFQIPAHLKNQAVFASCVLKNAELKFNFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTG-SA
      QVSQAKN--------------------------------LPNAPKALIIEPSRELAEQTLNNVKQFKKYVDS
      PKLRELLIIGGVAAKEQLTLLENGVDIVVGTPGRIDDLISTGKLNLSQVRFLVLDEADGLLSQGYSDFINRI
      HGQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPETVHHVVVPVNP-KKDKQWER
      LGKNH--IRTDGVHDKDNTRPGG-NSAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKLDCDNMEQYFI
      QQGGGPDKKG--HQFSCVCLH-SDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVAAEKEKVWYH--VCSSRGKGCHNTRLK
      EDGGCTIWYNETQLLSEIEEHLTCTISQVEPDIKVPLD----EFDGKVVYGQRRATGGGLYKGHVDILAPTV
      QELAALEKEAQTSFL------------------------HLGYLSNQLFRTF-
      >DDX1_XENLA/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKASVKTGSTVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWHGCRSTRGVN-KGKY
      YYEVSCHDQGL-CRVGWSTLSASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDNSIVK
      FSKNGKDLGLAFQIPSHMKNQAFFTSCVLKNAELKFNFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTG-SA
      QVSQTKS--------------------------------LPNAPKALIIEPSRELAEQTLNNVKQFKKYVDN
      PKLRELLIIGGVAAKEQLTILENGVDIVVGTPGRIDDLISTGKLSLSQVRFLVLDEADGLLSQGYSDFINRI
      YGQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPETVHHVVVPVNP-KKDKQWEK
      LAKNH--IRTDGVHDKDNTRPGG-NSAEVWSEAIKVLKGEYIVRAIKEHKMDQAIIFCRTKLDCDNMEQYFI
      QQGGGPDKKG--HQFSCVCLH-SDRKPPERKHNLERFKKCEVRFLICTDVAARGIDIRGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVASEKEKVWYH--VCSSRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLTCTISQVEPDIKVPLD----DFDGKVVYGQRRATGGGLYKGHVDILAPTV
      QELASLEKEAQTSFL------------------------HLGYLSNQLFRSF-
      >DDX1_PONAB/1-740 ATP-dependent RNA helicase DDX1
      MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQ
      E----------GKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLM-KGKH
      YYEVSCHDQGL-CRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVK
      FSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSG-NA
      QVTQTKF--------------------------------LPNAPKALIVEPSRELAEQTLNNIKQFKKYIDN
      PKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM
      HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNP-KTDRLWER
      LGKSH--IRTDDVHAKDNTRPGA-NSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI
      QQGGGPDKKG--HQFSCVCLH-GDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY----------
      --------VINVTLPDEKQNYVHRIGRVGRAER----MGLAISLVATEKEKVWYH--VCSSRGKGCYNTRLK
      EDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVD----EFDGKVTYGQKRAAGGGSYKGHVDILAPTV
      QGLAALEKEAQTSFL------------------------HLGYLPNQLFRTS-

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Updated: