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- JAL-4456
Cannot change "double click" setting for links - JAL-3741
References to http://www.jalview.org/ should be changed to https://www.jalview.org/ where possible - JAL-3689
Some URLs are detected with fileName.startsWith("http://") but should include "https://" too - JAL-2771
User-defined UrlLinks force db name = first word of description - JAL-2539
Prioritise one link template over others when choosing which URL to open when double clicking - JAL-2538
autogenerate link set using matching regular expressions from sequence metadata - JAL-2414
Regular expressions containing '$' are not processed correctly in Link URL templates - JAL-2316
Update URL links from external sources
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id=\"searcher-component\" multiple=\"multiple\" name=\"component\" size=\"2\" aria-label=\"Search for components\">\n <optgroup label=\"\">\n <option value=\"-1\" title=\"No Component\">No Component</option>\n </optgroup>\n <optgroup label=\"\">\n <option value=\"id:analysis\" title=\"analysis\">analysis</option>\n <option value=\"id:annotation\" title=\"annotation\">annotation</option>\n <option value=\"id:awt-gui\" title=\"awt-gui\">awt-gui</option>\n <option value=\"id:Bamboo\" title=\"Bamboo\">Bamboo</option>\n <option value=\"id:Benchmarking\" title=\"Benchmarking\">Benchmarking</option>\n <option value=\"id:bioconda\" title=\"bioconda\">bioconda</option>\n <option value=\"id:bob\" title=\"bob\">bob</option>\n <option value=\"id:cds/protein\" title=\"cds/protein\">cds/protein</option>\n <option value=\"id:checkstyle\" title=\"checkstyle\">checkstyle</option>\n <option value=\"id:chimerax\" title=\"chimerax\">chimerax</option>\n <option value=\"id:colourschemes\" title=\"colourschemes\">colourschemes</option>\n <option value=\"id:Command Line Interface\" title=\"Command Line Interface\">Command Line Interface</option>\n <option value=\"id:controller\" title=\"controller\">controller</option>\n <option value=\"id:DAS\" title=\"DAS\">DAS</option>\n <option value=\"id:data retrieval services\" title=\"data retrieval services\">data retrieval services</option>\n <option value=\"id:Datamodel\" title=\"Datamodel\">Datamodel</option>\n <option value=\"id:debian\" title=\"debian\">debian</option>\n <option value=\"id:Dev and Dep\" title=\"Dev and Dep\">Dev and Dep</option>\n <option value=\"id:documentation\" title=\"documentation\">documentation</option>\n <option value=\"id:editing\" title=\"editing\">editing</option>\n <option value=\"id:Efficiency\" title=\"Efficiency\">Efficiency</option>\n <option value=\"id:Feature Request\" title=\"Feature Request\">Feature Request</option>\n <option value=\"id:feature retrieval service\" title=\"feature 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<option value=\"id:java11\" title=\"java11\">java11</option>\n <option value=\"id:java8\" title=\"java8\">java8</option>\n <option value=\"id:java9\" title=\"java9\">java9</option>\n <option value=\"id:jvdesktop\" title=\"jvdesktop\">jvdesktop</option>\n <option value=\"id:JVL-Ajax\" title=\"JVL-Ajax\">JVL-Ajax</option>\n <option value=\"id:jvlite\" title=\"jvlite\">jvlite</option>\n <option value=\"id:JWS-GUI\" title=\"JWS-GUI\">JWS-GUI</option>\n <option value=\"id:JWS1\" title=\"JWS1\">JWS1</option>\n <option value=\"id:JWS2\" title=\"JWS2\">JWS2</option>\n <option value=\"id:launcher\" title=\"launcher\">launcher</option>\n <option value=\"id:localexecution\" title=\"localexecution\">localexecution</option>\n <option value=\"id:logging\" title=\"logging\">logging</option>\n <option value=\"id:na\" title=\"na\">na</option>\n <option value=\"id:openjdk\" title=\"openjdk\">openjdk</option>\n <option value=\"id:OSX-App\" title=\"OSX-App\">OSX-App</option>\n <option value=\"id:overview\" title=\"overview\">overview</option>\n <option value=\"id:PAE\" title=\"PAE\">PAE</option>\n <option value=\"id:pdbe\" title=\"pdbe\">pdbe</option>\n <option value=\"id:printing and export\" title=\"printing and export\">printing and export</option>\n <option value=\"id:Properties and Preferences\" title=\"Properties and Preferences\">Properties and Preferences</option>\n <option value=\"id:provenance\" title=\"provenance\">provenance</option>\n <option value=\"id:Release-process\" title=\"Release-process\">Release-process</option>\n <option value=\"id:renderer\" title=\"renderer\">renderer</option>\n <option value=\"id:REST-API\" title=\"REST-API\">REST-API</option>\n <option value=\"id:Scriptable API\" title=\"Scriptable API\">Scriptable API</option>\n <option value=\"id:selection\" title=\"selection\">selection</option>\n <option value=\"id:sequencefeatures\" title=\"sequencefeatures\">sequencefeatures</option>\n <option value=\"id:server event\" title=\"server event\">server event</option>\n <option value=\"id:slivka\" title=\"slivka\">slivka</option>\n <option value=\"id:Structures\" title=\"Structures\">Structures</option>\n <option value=\"id:Test suite\" title=\"Test suite\">Test suite</option>\n <option value=\"id:training\" title=\"training\">training</option>\n <option value=\"id:Translations\" title=\"Translations\">Translations</option>\n <option value=\"id:trees\" title=\"trees\">trees</option>\n <option selected=\"selected\" value=\"id:urllinks\" title=\"urllinks\">urllinks</option>\n <option value=\"id:usernews\" title=\"usernews\">usernews</option>\n <option value=\"id:uxstudy\" title=\"uxstudy\">uxstudy</option>\n <option value=\"id:vamsas\" title=\"vamsas\">vamsas</option>\n <option value=\"id:variants\" title=\"variants\">variants</option>\n <option value=\"id:varna\" title=\"varna\">varna</option>\n <option value=\"id:web service bug\" title=\"web service bug\">web service bug</option>\n <option value=\"id:web service request\" title=\"web service request\">web service request</option>\n <option value=\"id:website\" title=\"website\">website</option>\n <option value=\"id:Webstart\" title=\"Webstart\">Webstart</option>\n <option value=\"id:Window Geom\" title=\"Window Geom\">Window Geom</option>\n </optgroup>\n </select>\n </div>\n ","jql":"component = urllinks","validSearcher":true,"isShown":true},"project":{"name":"Project","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldpid\">Project:</label><span id=\"fieldpid\" class=\"fieldValue\">\n \n <a href=\"/browse/JAL\" title=\"Browse Jalview project\">Jalview</a> </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-project\" >\n <label for=\"searcher-pid\">Project</label>\n \n\n <select class=\"select js-default-checkboxmultiselect\" data-placeholder-text=\"Find Projects...\" id=\"searcher-pid\" multiple=\"multiple\" name=\"pid\" size=\"5\">\n <optgroup label=\"All Projects\">\n \n <option data-icon=\"/secure/projectavatar?pid=10020&size=small\"\n title=\"JABAWS\"\n value=\"10020\">\n JABAWS (JWS)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10010&size=small\"\n selected=\"selected\" title=\"Jalview\"\n value=\"10010\">\n Jalview (JAL)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10030&size=small\"\n title=\"JPred\"\n value=\"10030\">\n JPred (JPRED)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10130&size=small\"\n title=\"ProteoCache\"\n value=\"10130\">\n ProteoCache (PROT)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10230&size=small\"\n title=\"The jalview.org websites \"\n value=\"10230\">\n The jalview.org websites (JVO)\n </option>\n </optgroup>\n </select>\n </div>\n \n","jql":"project = JAL","validSearcher":true,"isShown":true},"assignee":{"name":"Assignee","editHtml":"\n \n <div class=\"field-group aui-field-userlist\" >\n <label for=\"searcher-assigneeSelect\">Assignee</label>\n <fieldset 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data-icon=\"/images/icons/statuses/open.png\" value=\"1\" title=\"Open\" data-simple-status=\"{"id":"1","name":"Open","description":"The issue is open and ready for the assignee to start work on it.","iconUrl":"/images/icons/statuses/open.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Open</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/inprogress.png\" value=\"3\" title=\"In Progress\" data-simple-status=\"{"id":"3","name":"In Progress","description":"This issue is being actively worked on at the moment by the assignee.","iconUrl":"/images/icons/statuses/inprogress.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">In Progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/reopened.png\" value=\"4\" title=\"Reopened\" data-simple-status=\"{"id":"4","name":"Reopened","description":"This issue was once resolved, but the resolution was deemed incorrect. From here issues are either marked assigned or resolved.","iconUrl":"/images/icons/statuses/reopened.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Reopened</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/resolved.png\" value=\"5\" title=\"Resolved\" data-simple-status=\"{"id":"5","name":"Resolved","description":"A resolution has been taken, and it is awaiting verification by reporter. From here issues are either reopened, or are closed.","iconUrl":"/images/icons/statuses/resolved.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Resolved</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"6\" title=\"Closed\" data-simple-status=\"{"id":"6","name":"Closed","description":"The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.","iconUrl":"/images/icons/statuses/closed.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Closed</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10000\" title=\"Being documented\" data-simple-status=\"{"id":"10000","name":"Being documented","description":"Feature implementation is complete and passed alpha-testing, and now ready for documentation.","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Being documented</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10002\" title=\"Ready for testing\" data-simple-status=\"{"id":"10002","name":"Ready for testing","description":"Feature is ready for testing by non-developers","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Ready for testing</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/generic.png\" value=\"10003\" title=\"Being tested\" data-simple-status=\"{"id":"10003","name":"Being tested","description":"","iconUrl":"/images/icons/statuses/generic.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">Being tested</option>\n </select>\n </div>\n \n","validSearcher":true,"isShown":true}}}
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